Question 10 of 20 Fundamentals Concept
What are the essential parts of an expression plasmid, and what does each do?
Short answer
At minimum a plasmid needs a bacterial origin of replication, an antibiotic resistance gene and a site to insert DNA. An expression plasmid adds a promoter to drive transcription of the insert, and usually a selectable marker that works in the target cells rather than in bacteria.
Why
The origin of replication recruits the host's replication machinery and sets copy number, so a high-copy origin yields more DNA per culture while a low-copy one is gentler on toxic inserts. The antibiotic resistance gene lets only bacteria carrying the plasmid grow on a selective plate. A multiple cloning site gives unique restriction sites for inserting DNA, and Addgene's reference notes that those sites should not appear elsewhere in the backbone.
The promoter decides where and how strongly the insert is transcribed. A strong viral promoter gives high expression, while a weaker or tissue-specific one gives something closer to endogenous levels. A mammalian selectable marker, under a non-bacterial promoter, picks out the cells that took up the plasmid, and can be a drug resistance gene or a fluorescent protein for sorting.
Other common parts include a polyadenylation signal, primer binding sites for sequencing, and tags. Each choice has costs. A strong promoter can overwhelm a pathway and cause artifacts.
A high-copy backbone can be unstable with repeats. Picking the right combination for the question is most of the design work.
A strong answer covers
- Origin of replication sets copy number
- Antibiotic resistance for bacterial selection
- Cloning site for the insert
- Promoter sets level and specificity of expression
- Separate selectable marker for the target cells
Common mistakes
- Confusing the bacterial resistance gene with the mammalian selection marker
- Assuming a strong promoter is always the right choice
- Forgetting the polyadenylation signal in a mammalian expression construct
The interviewer might ask next
When would you choose a low-copy backbone over a high-copy one?